SNP Profiles matching PA 150 [PER]

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	CT	AC	CC	GT	CT	CT	AT	AG	CT	AG
1._GC-01-034-2-11	CT	AG	CG	CT	CT	AC	CC	GT	CT	CT	AT	AG	CT	AG
2._GC-08-088-2-11	CT	AG	CG	CC	CT	AC	CC	GT	CT	CT	AT	AG	CT	AG
3._GC-01-002-1-02	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
4._GC-01-002-1-02	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
5._GC-01-002-1-02	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
6._EET_45_[ECU]	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
7._GC-03-017-2-06	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
8._LCT_EEN_37_/F	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
9._GC-08-160-4-03	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
10._DOM_1	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
11._DOM_1	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
12._DOM_1	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
13._DOM_1	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
14._DOM_1	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
15._GC-08-259-8-27	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
16._GC-08-259-8-27	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
17._GC-08-259-8-27	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
18._GC-08-259-8-27	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
19._GC-08-259-8-27	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
20._LCT_EEN_37_/F	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
21._LCT_EEN_37_/F	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
22._LCT_EEN_37_/F	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
23._GC-08-160-4-03	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
24._GC-08-160-4-03	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG
25._GC-08-160-4-03	CT	AA	CG	CT	CT	AC	CC	GT	CT	CT	AA	AG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CC	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
1._GC-01-034-2-11	CT	AT	CC	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
2._GC-08-088-2-11	CT	AT	CC	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
3._GC-01-002-1-02	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
4._GC-01-002-1-02	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
5._GC-01-002-1-02	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
6._EET_45_[ECU]	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
7._GC-03-017-2-06	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
8._LCT_EEN_37_/F	CT	AT	CG	CT	CT	CG	GG	AG	TT	_	CC	GT	CT	AC
9._GC-08-160-4-03	CT	AT	CG	CT	CT	CG	GG	AG	TT	_	CC	GT	CT	AC
10._DOM_1	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
11._DOM_1	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
12._DOM_1	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
13._DOM_1	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
14._DOM_1	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
15._GC-08-259-8-27	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
16._GC-08-259-8-27	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
17._GC-08-259-8-27	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
18._GC-08-259-8-27	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
19._GC-08-259-8-27	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CC	GT	CT	AC
20._LCT_EEN_37_/F	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC
21._LCT_EEN_37_/F	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC
22._LCT_EEN_37_/F	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC
23._GC-08-160-4-03	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC
24._GC-08-160-4-03	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC
25._GC-08-160-4-03	CT	AT	CG	CT	CT	CG	GG	AG	TT	CC	CC	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
1._GC-01-034-2-11	AG	GG	AA	CC	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
2._GC-08-088-2-11	AG	AG	AA	CC	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
3._GC-01-002-1-02	AG	AG	AA	CC	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
4._GC-01-002-1-02	AG	AG	AA	CC	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
5._GC-01-002-1-02	AG	AG	AA	CC	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
6._EET_45_[ECU]	AG	AG	AA	CC	AA	CC	AC	_	GT	AC	AT	CG	X_X	X_X
7._GC-03-017-2-06	AG	AG	AA	CC	AA	CC	AC	_	GT	AC	AT	CG	X_X	X_X
8._LCT_EEN_37_/F	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
9._GC-08-160-4-03	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
10._DOM_1	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
11._DOM_1	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
12._DOM_1	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
13._DOM_1	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
14._DOM_1	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
15._GC-08-259-8-27	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
16._GC-08-259-8-27	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
17._GC-08-259-8-27	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
18._GC-08-259-8-27	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
19._GC-08-259-8-27	AG	GG	AT	CT	AA	CC	AC	CT	GT	AA	AT	CG	X_X	X_X
20._LCT_EEN_37_/F	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
21._LCT_EEN_37_/F	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
22._LCT_EEN_37_/F	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
23._GC-08-160-4-03	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
24._GC-08-160-4-03	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
25._GC-08-160-4-03	AG	GG	AA	CT	AA	CC	AC	CT	GT	AC	AT	CG	X_X	X_X

Input profile: PA_150_[PER]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1209 5 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

2._EB_1516 GC-08-088-2-11

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._VB_/REGINA GC-01-002-1-02

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

4._VB_/REGINA GC-01-002-1-02

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

5._VB_/REGINA GC-01-002-1-02

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

6._EET_45_[ECU]

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3206 2 > FP

Dapeng Zhang, 2016

7._EET_45_[ECU] GC-03-017-2-06

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

8._LCT_EEN_37_/F

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8403 1

Dapeng Zhang, 2016

9._LCT_EEN_37_/F GC-08-160-4-03

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._DOM_1

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8827 5

Dapeng Zhang, 2016

11._DOM_1

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8827 4

Dapeng Zhang, 2016

12._DOM_1

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8827 3

Dapeng Zhang, 2016

13._DOM_1

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8827 2

Dapeng Zhang, 2016

14._DOM_1

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8827 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._DOM_1 GC-08-259-8-27

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._DOM_1 GC-08-259-8-27

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

17._DOM_1 GC-08-259-8-27

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._DOM_1 GC-08-259-8-27

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._DOM_1 GC-08-259-8-27

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._LCT_EEN_37_/F

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8403 7

Dapeng Zhang, 2016

21._LCT_EEN_37_/F

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8403 5

Dapeng Zhang, 2016

22._LCT_EEN_37_/F

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8403 2

Dapeng Zhang, 2016

23._LCT_EEN_37_/F GC-08-160-4-03

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

24._LCT_EEN_37_/F GC-08-160-4-03

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

25._LCT_EEN_37_/F GC-08-160-4-03

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25